PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G34390.1
Common NameLOC102710991
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 393aa    MW: 42725 Da    PI: 8.2972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G34390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10526325
                  S---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                  +e+Cr+f+r G CkyG++C++ H
  OB06G34390.1  5 QEICRNFQR-GSCKYGAQCRYLH 26
                  79*******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-7228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.906229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.46E-5327IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-7626IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSRRQEICRN FQRGSCKYGA QCRYLHASPH QQQQARPNPF GFGTGSRQQQ PSFGSQFQQQ  60
QQQQQKPNPF GFGVQGANAQ SRNAPGPAKP FQNKWVRDPS APTKQAEAAQ PPQAQAAHTS  120
CEDLQSCRQQ ISEDFKNEAP IWKLTCYAHL RSGPCDIKGD ISFEELRAKA YEEGKQGHSL  180
QSIVEGERNL QNAKLMEFTN LLNSAHPSQT PNFPTMGSFP GVNNNSSFGA SQTNGPPVFS  240
SFSQIGAATN LGPGSGITTP GVPASSPFGQ SSSAPHAAPT FGSSQMKFGV SSAFGNQGLR  300
QPFGTFQSSS NNFPKSSAGY QQSSASSAQH RDIDRQSQEL LSGMMAPTSV MDEASAENIK  360
NENQDDSIWL KEKWAIGEIP LDEPPQRHVS HVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070080.0AK107008.1 Oryza sativa Japonica Group cDNA clone:002-120-E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656457.10.0PREDICTED: zinc finger CCCH domain-containing protein 46 isoform X1
SwissprotQ5Z8070.0C3H46_ORYSJ; Zinc finger CCCH domain-containing protein 46
TrEMBLJ3MHE50.0J3MHE5_ORYBR; Uncharacterized protein
STRINGOB06G34390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94472829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.19e-50C3H family protein